Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs35116528 chr6:25975669 A/G 1.52E-8 511 41.27 36.95 2.38 KM Plot
KIRC rs35147998 chr21:47852085 G/A 2.7E-5 522 38.97 46.18 6.87 KM Plot
KIRC rs35169013 chr6:25918027 A/C 7.13E-5 521 41.73 34.82 1.4 KM Plot
KIRC rs35190747 chr3:48343290 C/T 3.51E-5 520 39.53 40.93 19.13 KM Plot
KIRC rs35249036 chr6:26026163 C/G 8.51E-9 520 41.13 37.37 3.37 KM Plot
KIRC rs35281281 chr6:50800453 C/CA 5.02E-5 524 40 40.6 15.45 KM Plot
KIRC rs35297395 chr3:48342882 C/T 3.51E-5 520 39.53 40.93 19.13 KM Plot
KIRC rs35335639 chr6:26038681 C/G 5.4E-9 523 41 37.03 3.37 KM Plot
KIRC rs35367169 chr6:26040595 G/A 6.36E-9 522 41 36.95 3.37 KM Plot
KIRC rs35378061 chr6:26059157 C/A 6.21E-9 521 41.27 35.4 3.37 KM Plot
KIRC rs35402046 chr6:26099472 G/A 1.37E-8 509 41.27 36.28 3.37 KM Plot
KIRC rs35411187 chr3:48360017 C/G 2.97E-5 525 39.53 41.27 19.13 KM Plot
KIRC rs35444309 chr7:46582684 C/A 6.02E-5 508 47.73 33.57 28.7 KM Plot
KIRC rs35456569 chr3:48250899 T/A 5.88E-5 512 39.7 41.27 21.12 KM Plot
KIRC rs35484309 chr6:26105369 C/T 9.07E-9 513 41.27 36.87 3.37 KM Plot